Commissure coordinates

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

AC/PC Or Normalization
Align and Resample
Ana Brain Mask from T1 MRI
Ana Split Brain from Brain Mask
Anatomist show Commissure coordinates
Brain Detection
Brain Detection (Utrecht)
Brain Mask Segmentation
Compute Brain Mask
Compute Cortical Fold Graph Upgrade From Old
Correction Brain Mask from T1 MRI
Correction Split Brain from Brain Mask
Cortical Fold Arg (3.0)
Cortical Fold Graph (3.1+)
Cortical Fold Graph (general)
Cortical Fold Graph (one hemisphere)
Cortical Fold Graph 2007-2011 (general)
Cortical Fold Graph Upgrade Structure
Cortical Folds Graph
Graph Structure (3.0)
Graph Structure (3.1)
Grey White Classification 2012
Hemi Surfaces and Sulci Extraction
Hemisphere Cortical Folds Graph
Hemisphere Grey White Classification
Import FreeSurfer grey/white segmentation to Morphologist
Import MNI CIVET Segmentation
Inner Surface Initialization
Manual Drawing of Cerebellum and Segmentation of Central Grey Nuclei from 2 Orthogonal Slices
Normalization pipeline
Prepare For Morphologist
Prepare MRI
Prepare Subject for Anatomical Pipeline
Read and complete AC-PC files
Reorient Anatomy
Segmentation of Cerebellum, Central Grey Nuclei and Ventricules (Utrecht)
Simplified Brain Detection (Utrecht)
Simplified Morphologist 2015
Skull-stripped brain normalization
Split Brain Mask
Split Brain Mask
Surface Deformation
Surface Deformation (Utrecht)
Surfaces and Sulci Extraction
T1 Bias Correction
Talairach Transformation
Talairach transformation from manual AC/PC
Talairach Transformation From Normalization
Transform a commissures AC-PC coordinates
Validation_0 Commissure Coordinates
View in hippocampic referential
VIP Bias Correction
Vip Get Brain
Vip Split Brain

Associated formats

Commissure coordinates

Associated ontology rules

  • flat :
    • ./<filename>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/<subject>
    {center}/{subject}/anatomical_mri/{acquisition}/<subject>
  • brainvisa-3.0 :
    • {protocol}/{subject}/anatomy/<subject>
    {protocol}/{subject}/anatomy/{acquisition}/<subject>
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/<subject>

    Key attributes

  • brainvisa-3.2.0 :
    • rescan ,  acquisition_date ,  time_point ,  time_duration ,  mapped ,  contrast ,  center ,  subject ,  acquisition ,  modality
  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition